MolNFT v1 · #125207 · protein

Crystal structure of arabidopsis thaliana BOR1

5L25 · Boron transporter 1: “Crystal structure of arabidopsis thaliana BOR1”. X-ray diffraction, 7 pockets (best druggability 0.80). MolNFT v1 #125207 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5L25
Type: protein
Length: 399 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Boron transporter 1
UniProt: Q8VYR7
Pockets: 7 · best druggability 0.80

Structure

x-ray diffraction · 1 distinct chain · 70% helix, 1% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Boron transporter 1	protein	399	70% helix, 1% strand	Q8VYR7

Pockets

7 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	879	0.80	0.82	75	empty
2	246	0.79	0.92	42	empty
3	362	0.62	0.78	59	empty
4	281	0.58	0.77	26	empty
5	168	0.45	0.75	24	empty

Compared structures

5L25 · Crystal Structure of Arabidopsis thaliana Bor1 · the same entry in another collection · chain A against A, TM-score 1.00
Q8VYR7 · AlphaFold monomer V2.0 prediction for boron transporter 1 (Q8VYR7) · a predicted model of the same protein · chain A against A, TM-score 0.95

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8VYR7
Elsewhere: RCSB PDB 5L25 · PDBe 5L25 · UniProt Q8VYR7

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