MolNFT v1 · #125165 · protein
Structure of post-translational translocation SEC71/SEC72 complex
5L0W: “Structure of post-translational translocation SEC71/SEC72 complex”. X-ray diffraction, 2 pockets (best druggability 0.40). MolNFT v1 #125165 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5L0W
- Type
- protein
- Length
- 371 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- SEC72; SEC71
- UniProt
- G0SH41, G0S0B5
- Pockets
- 2 · best druggability 0.40
Structure
x-ray diffraction · 2 distinct chains · 68% helix, 2% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B | SEC72 | protein | 209 | 65% helix, 3% strand | G0SH41 |
| A | SEC71 | protein | 162 | 72% helix, 0% strand | G0S0B5 |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 137 | 0.40 | 0.74 | 24 | empty |
| 2 | 87 | 0.36 | 0.75 | 20 | empty |
Interfaces
1 interface between chains.
- B–A · 2316 Ų buried · 17 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 6 modified (engineered).
Compared structures
- 5L0W · Structure of post-translational translocation Sec71/Sec72 complex · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt G0SH41
- Every structure of UniProt G0S0B5
- Elsewhere: RCSB PDB 5L0W · PDBe 5L0W · UniProt G0SH41 · UniProt G0S0B5
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