MolNFT v1 · #125139 · DNA

Solution structure of a DNA dodecamer with 5-methylcytosine at the 3RD position

5L06 · DNA (5'-D(*CP*GP*(5CM)P*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'): “Solution structure of a DNA dodecamer with 5-methylcytosine at the 3RD position”. Solution nmr. MolNFT v1 #125139 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5L06
Type: DNA
Length: 24 nucleotides
Chains: 2
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: DNA (5'-D(*CP*GP*(5CM)P*GP*AP*AP*TP*TP*CP*GP*CP*G)-3')

Structure

solution nmr · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	DNA (5'-D(CPGP(5CM)PGPAPAPTPTPCPGPCPG)-3')	dna	12	—	—

Interfaces

1 interface between chains.

A–B · 560 Å² buried · 60 hydrogen bonds · nucleic-nucleic

Modifications

Observed in the structure: 2 modified (nucleotide modification).

Compared structures

5L06 · Solution Structure of a DNA Dodecamer with 5-methylcytosine at the 3rd Position · the same entry in another collection · chain B against B, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 5L06 · PDBe 5L06

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