MolNFT v1 · #125041 · protein
Structure of salo
5KX4 · 10.7 kda salivary protein: “Structure of salo”. X-ray diffraction, 2 pockets (best druggability 0.78). MolNFT v1 #125041 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5KX4
- Type
- protein
- Length
- 188 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 10.7 kda salivary protein
- UniProt
- Q5WPZ4
- Pockets
- 2 · best druggability 0.78
Structure
x-ray diffraction · 2 distinct chains · 68% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 10.7 kda salivary protein | protein | 95 | 65% helix, 0% strand | Q5WPZ4 |
| B | 10.7 kda salivary protein | protein | 93 | 70% helix, 0% strand | Q5WPZ4 |
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 334 | 0.78 | 0.88 | 37 | empty |
| 2 | 249 | 0.76 | 0.89 | 31 | empty |
Interfaces
1 interface between chains.
- A–B · 919 Ų buried · 19 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 6 disulfide (disulfide).
Compared structures
- 5KX4 · Structure of SALO · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5WPZ4
- Elsewhere: RCSB PDB 5KX4 · PDBe 5KX4 · UniProt Q5WPZ4
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