MolNFT v1 · #124992 · protein
Extracellular region of mouse GPR56/ADGRG1 in complex with FN3 monobody
5KVM: “Extracellular region of mouse GPR56/ADGRG1 in complex with FN3 monobody”. X-ray diffraction, 2 ligands (NAG, BMA). MolNFT v1 #124992 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5KVM
- Type
- protein
- Length
- 459 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q8K209
- Ligands
- NAG, BMA
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 355 | — | Q8K209 |
| B | — | protein | 9 | — | Q8K209 |
| C | — | protein | 95 | — | — |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 5 copies · chains A
- BMA · beta-D-mannopyranose · sugar · 2 copies · chains A
- GOL · Glycerol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5KVM · Extracellular region of mouse GPR56/ADGRG1 in complex with FN3 monobody · the same entry in another collection · chain A against A, TM-score 1.00
- Q8K209 · AlphaFold monomer V2.0 prediction for adhesion G-protein coupled receptor G1 (Q8K209) · a predicted model of the same protein · chain A against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8K209
- Elsewhere: RCSB PDB 5KVM · PDBe 5KVM · UniProt Q8K209
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