MolNFT v1 · #124945 · protein + DNA
Bacillus cereus DNA glycosylase alkd bound to 7-methylguanine nucleobase and DNA containing an oxocarbenium-intermediate analog
5KUB: “Bacillus cereus DNA glycosylase alkd bound to 7-methylguanine nucleobase and DNA containing an…”. X-ray diffraction, 1 ligand (MY6). MolNFT v1 #124945 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5KUB
- Type
- protein + DNA
- Length
- 255 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- C2T7T7
- Ligands
- MY6
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 231 | — | C2T7T7 |
| B | — | dna | 12 | — | — |
| C | — | dna | 12 | — | — |
Ligands and binding sites
- MY6 · 2-amino-7-methyl-1,7-dihydro-6H-purin-6-one · ligand · chains A, B, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5KUB · Bacillus cereus DNA glycosylase AlkD bound to 7-methylguanine nucleobase and DNA… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt C2T7T7
- Elsewhere: RCSB PDB 5KUB · PDBe 5KUB · UniProt C2T7T7
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