MolNFT v1 · #124881 · protein

Crystal structure of the W153F variant of catalase-peroxidase from B. pseudomallei treated with isoniazid

5KSG: “Crystal structure of the W153F variant of catalase-peroxidase from B. pseudomallei treated with isoniazid”. X-ray diffraction, 6 ligands (HEM, NIZ, NA). MolNFT v1 #124881 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5KSG
Type: protein
Length: 1,427 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: Q3JNW6
Ligands: HEM, NIZ, NA, OXY, CL, PO4

Structure

x-ray diffraction · 2 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	713	—	Q3JNW6
B	—	protein	714	—	Q3JNW6

Ligands and binding sites

HEM · Protoporphyrin IX containing Fe · ligand · 2 copies · chains A, B
NIZ · pyridine-4-carbohydrazide · ligand · chains B
NA · Sodium ion · metal · 2 copies · chains A, B
OXY · Oxygen molecule · ion · 4 copies · chains A, B
CL · Chloride ion · ion · 2 copies · chains A, B
PO4 · Phosphate ion · ion · 2 copies · chains A, B
MPD · (4S)-2-methyl-2,4-pentanediol · additive · 4 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

5KSG · Crystal structure of the W153F variant of catalase-peroxidase from B. pseudomallei… · the same entry in another collection · chain A against A, TM-score 1.00
Q3JNW6 · AlphaFold monomer V2.0 prediction for catalase-peroxidase (Q3JNW6) · a predicted model of the same protein · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q3JNW6
Elsewhere: RCSB PDB 5KSG · PDBe 5KSG · UniProt Q3JNW6

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