MolNFT v1 · #124849 · protein

Covalent inhibitor of LYPLAL1

5KRE: “Covalent inhibitor of LYPLAL1”. X-ray diffraction, 2 ligands (6WG, NO3). MolNFT v1 #124849 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5KRE
Type: protein
Length: 224 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: Q5VWZ2
Ligands: 6WG, NO3

Structure

x-ray diffraction · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	224	—	Q5VWZ2

Ligands and binding sites

6WG · (2~{R})-2-phenylpiperidine-1-carbaldehyde · ligand · chains A
NO3 · Nitrate ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

5KRE · Covalent inhibitor of LYPLAL1 · the same entry in another collection · chain A against A, TM-score 1.00
Q5VWZ2 · AlphaFold monomer V2.0 prediction for lysophospholipase-like protein 1 (Q5VWZ2) · a predicted model of the same protein · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q5VWZ2
Elsewhere: RCSB PDB 5KRE · PDBe 5KRE · UniProt Q5VWZ2

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