MolNFT v1 · #124810 · protein

Identification and structural characterization of lytu

5KQB · Peptidase M23: “Identification and structural characterization of lytu”. Solution nmr, 1 ligand (ZN), 1 pocket (best druggability 0.29). MolNFT v1 #124810 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5KQB
Type: protein
Length: 145 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Peptidase M23
EC: 3.4.24.75
UniProt: A0A0D6GI13
Ligands: ZN
Pockets: 1 · best druggability 0.29

Structure

solution nmr · 1 distinct chain · 8% helix, 39% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Peptidase M23 (EC 3.4.24.75)	protein	145	8% helix, 39% strand	A0A0D6GI13

Ligands and binding sites

ZN · Zinc ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	69	0.29	0.73	17	empty

Compared structures

5KQB · Identification and structural characterization of LytU · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A0D6GI13
Elsewhere: RCSB PDB 5KQB · PDBe 5KQB · UniProt A0A0D6GI13

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