MolNFT v1 · #124807 · protein
Crystal structure of the A359D variant of catalase-peroxidase from B. pseudomallei
5KQ6: “Crystal structure of the A359D variant of catalase-peroxidase from B. pseudomallei”. X-ray diffraction, 5 ligands (HEM, NA, CL). MolNFT v1 #124807 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5KQ6
- Type
- protein
- Length
- 1,426 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q3JNW6
- Ligands
- HEM, NA, CL, OXY, PO4
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | — | protein | 713 | — | Q3JNW6 |
Ligands and binding sites
- HEM · Protoporphyrin IX containing Fe · ligand · 2 copies · chains A, B
- NA · Sodium ion · metal · 2 copies · chains A, B
- CL · Chloride ion · ion · 2 copies · chains A, B
- OXY · Oxygen molecule · ion · 2 copies · chains A, B
- PO4 · Phosphate ion · ion · 2 copies · chains A, B
- MPD · (4S)-2-methyl-2,4-pentanediol · additive · 4 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5KQ6 · Crystal structure of the A359D variant of catalase-peroxidase from B. pseudomallei · the same entry in another collection · chain A against A, TM-score 1.00
- Q3JNW6 · AlphaFold monomer V2.0 prediction for catalase-peroxidase (Q3JNW6) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q3JNW6
- Elsewhere: RCSB PDB 5KQ6 · PDBe 5KQ6 · UniProt Q3JNW6
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