MolNFT v1 · #124758 · protein
The crystal structure of fluoride channel fluc EC2 F83I mutant
5KOM · Putative fluoride ion transporter crcb: “The crystal structure of fluoride channel fluc EC2 F83I mutant”. X-ray diffraction, 2 ligands (NA, F), 4 pockets (best druggability 0.53). MolNFT v1 #124758 on GenesisL1: 3D structure…
- PDB
- 5KOM
- Type
- protein
- Length
- 441 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative fluoride ion transporter crcb; Monobody
- UniProt
- Q6J5N4
- Ligands
- NA, F
- Pockets
- 4 · best druggability 0.53
Structure
x-ray diffraction · 3 distinct chains · 61% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative fluoride ion transporter crcb | protein | 124 | 85% helix, 0% strand | Q6J5N4 |
| B | Putative fluoride ion transporter crcb | protein | 125 | 85% helix, 0% strand | Q6J5N4 |
| C, D | Monobody | protein | 96 | 0% helix, 61% strand | — |
Ligands and binding sites
- NA · Sodium ion · metal · chains A, B
- F · Fluoride ion · ion · 2 copies · chains A, B
- DMU · Decyl-beta-D-maltopyranoside · additive · 3 copies · chains A, B, D, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 140 | 0.53 | 0.81 | 20 | empty |
| 2 | 98 | 0.48 | 0.81 | 19 | empty |
| 3 | 59 | 0.30 | 0.75 | 15 | empty |
| 4 | 60 | 0.29 | 0.74 | 14 | empty |
Interfaces
5 interfaces between chains.
- A–B · 1698 Ų buried · 22 hydrogen bonds · protein-protein
- B–C · 554 Ų buried · 1 hydrogen bond · protein-protein
- A–D · 554 Ų buried · 2 hydrogen bonds · protein-protein
- A–C · 400 Ų buried · 1 hydrogen bond · protein-protein
- B–D · 393 Ų buried · 2 hydrogen bonds · protein-protein
Compared structures
- 5KOM · The crystal structure of fluoride channel Fluc Ec2 F83I Mutant · the same entry in another collection · chain C against C, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6J5N4
- Elsewhere: RCSB PDB 5KOM · PDBe 5KOM · UniProt Q6J5N4
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.