MolNFT v1 · #124719 · protein
Crystal structure of darpin 6G9 in complex with cyno il-13
5KNH: “Crystal structure of darpin 6G9 in complex with cyno il-13”. X-ray diffraction, 1 pocket (best druggability 0.52). MolNFT v1 #124719 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5KNH
- Type
- protein
- Length
- 254 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Darpin 6G9; IL13
- UniProt
- Q0PW92
- Pockets
- 1 · best druggability 0.52
Structure
x-ray diffraction · 2 distinct chains · 57% helix, 2% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| D | Darpin 6G9 | protein | 157 | 54% helix, 0% strand | — |
| I | IL13 | protein | 97 | 62% helix, 6% strand | Q0PW92 |
Ligands and binding sites
- ACT · Acetate ion · additive · chains D, I
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 134 | 0.52 | 0.80 | 25 | ACT |
Interfaces
1 interface between chains.
- D–I · 981 Ų buried · 17 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 2 disulfide (disulfide).
Compared structures
- 5KNH · Crystal structure of darpin 6G9 in complex with cyno il-13 · the same entry in another collection · chain D against D, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q0PW92
- Elsewhere: RCSB PDB 5KNH · PDBe 5KNH · UniProt Q0PW92
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