MolNFT v1 · #124679 · protein
Human histidine triad nucleotide binding protein 2 (HHINT2) cidofovir complex
5KM8: “Human histidine triad nucleotide binding protein 2 (HHINT2) cidofovir complex”. X-ray diffraction, 2 ligands (L8P, CL). MolNFT v1 #124679 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5KM8
- Type
- protein
- Length
- 214 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q9BX68
- Ligands
- L8P, CL
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 102 | — | Q9BX68 |
| B | — | protein | 112 | — | Q9BX68 |
Ligands and binding sites
- L8P · ({[(2S)-1-(4-amino-2-oxopyrimidin-1(2H)-yl)-3-hydroxypropan-2-yl]oxy}methyl)phosphonic acid · ligand · chains A, B
- CL · Chloride ion · ion · chains A
- EDO · 1,2-ethanediol · additive · 2 copies · chains B
- DMS · Dimethyl sulfoxide · additive · chains A, B
- GOL · Glycerol · additive · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5KM8 · Human Histidine Triad Nucleotide Binding Protein 2 (hHint2) Cidofovir complex · the same entry in another collection · chain A against A, TM-score 1.00
- Q9BX68 · AlphaFold monomer V2.0 prediction for histidine triad nucleotide- binding protein 2… · a predicted model of the same protein · chain B against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9BX68
- Elsewhere: RCSB PDB 5KM8 · PDBe 5KM8 · UniProt Q9BX68
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