MolNFT v1 · #124647 · protein + RNA
Crystal structure of the pumilio-nos-cyclinb RNA complex
5KL8: “Crystal structure of the pumilio-nos-cyclinb RNA complex”. X-ray diffraction, 1 ligand (ZN). MolNFT v1 #124647 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5KL8
- Type
- protein + RNA
- Length
- 389 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P25822, P25724
- Ligands
- ZN
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 309 | — | P25822 |
| B | — | protein | 69 | — | P25724 |
| C | — | rna | 11 | — | — |
Ligands and binding sites
- ZN · Zinc ion · metal · 2 copies · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5KL8 · Crystal structure of the Pumilio-Nos-CyclinB RNA complex · the same entry in another collection · chain A against A, TM-score 1.00
- P25822 · AlphaFold monomer V2.0 prediction for maternal protein pumilio (P25822) · a predicted model of the same protein · chain A against A, TM-score 0.96
- P25724 · AlphaFold monomer V2.0 prediction for protein nanos (P25724) · a predicted model of the same protein · chain B against A, TM-score 0.95
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P25822
- Every structure of UniProt P25724
- Elsewhere: RCSB PDB 5KL8 · PDBe 5KL8 · UniProt P25822 · UniProt P25724
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