MolNFT v1 · #124627 · protein
A 1.55A X-ray structure from vibrio cholerae O1 biovar el tor of a hypothetical protein
5KKO · Uncharacterised protein: “A 1.55A X-ray structure from vibrio cholerae O1 biovar el tor of a hypothetical protein”. X-ray diffraction, 5 pockets (best druggability 0.63). MolNFT v1 #124627 on GenesisL1: 3D structure, binding sites…
- PDB
- 5KKO
- Type
- protein
- Length
- 313 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uncharacterised protein
- UniProt
- A0A0H7H6M3
- Pockets
- 5 · best druggability 0.63
Structure
x-ray diffraction · 6 distinct chains · 52% helix, 6% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Uncharacterised protein | protein | 53 | 49% helix, 9% strand | A0A0H7H6M3 |
| B | Uncharacterised protein | protein | 54 | 54% helix, 9% strand | A0A0H7H6M3 |
| C | Uncharacterised protein | protein | 55 | 47% helix, 9% strand | A0A0H7H6M3 |
| D | Uncharacterised protein | protein | 52 | 58% helix, 10% strand | A0A0H7H6M3 |
| E | Uncharacterised protein | protein | 54 | 48% helix, 0% strand | A0A0H7H6M3 |
| F | Uncharacterised protein | protein | 45 | 58% helix, 0% strand | A0A0H7H6M3 |
Pockets
5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 315 | 0.63 | 0.79 | 37 | empty |
| 2 | 171 | 0.49 | 0.77 | 23 | empty |
| 3 | 204 | 0.47 | 0.75 | 33 | empty |
| 4 | 66 | 0.31 | 0.75 | 15 | empty |
| 5 | 59 | 0.26 | 0.72 | 22 | empty |
Interfaces
11 interfaces between chains.
- B–C · 1271 Ų buried · 11 hydrogen bonds · protein-protein
- A–D · 1268 Ų buried · 7 hydrogen bonds · protein-protein
- C–E · 650 Ų buried · 6 hydrogen bonds · protein-protein
- D–F · 500 Ų buried · 6 hydrogen bonds · protein-protein
- A–E · 176 Ų buried · 0 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 12 modified (engineered).
Compared structures
- 5KKO · A 1.55A X-Ray Structure from Vibrio cholerae O1 biovar El Tor of a Hypothetical Protein · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0H7H6M3
- Elsewhere: RCSB PDB 5KKO · PDBe 5KKO · UniProt A0A0H7H6M3
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