MolNFT v1 · #12456 · protein
Crystal structure of the pwwp domain of mammalian DNA methyltransferase DNMT3B
1KHC · DNA cytosine-5 methyltransferase 3B2: “Crystal structure of the pwwp domain of mammalian DNA methyltransferase DNMT3B”. X-ray diffraction, 1 ligand (UNX). MolNFT v1 #12456 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 1KHC
- Type
- protein
- Length
- 135 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA cytosine-5 methyltransferase 3B2
- EC
- 2.1.1.37
- UniProt
- O88509
- Ligands
- UNX
Structure
x-ray diffraction · 1 distinct chain · 39% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA cytosine-5 methyltransferase 3B2 (EC 2.1.1.37) | protein | 135 | 39% helix, 20% strand | O88509 |
Ligands and binding sites
- UNX · Unknown atom or ion · ion · 22 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 1KHC · Crystal Structure of the PWWP Domain of Mammalian DNA Methyltransferase Dnmt3b · the same entry in another collection · chain A against A, TM-score 1.00
- O88509 · AlphaFold monomer V2.0 prediction for DNA (cytosine-5)-methyltransferase 3B (O88509) · a predicted model of the same protein · chain A against A, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O88509
- Elsewhere: RCSB PDB 1KHC · PDBe 1KHC · UniProt O88509
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