MolNFT v1 · #124513 · protein
Fitted structure of rubella virus capsid protein
5KHF: “Fitted structure of rubella virus capsid protein”. Electron microscopy, 3 pockets (best druggability 0.63). MolNFT v1 #124513 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5KHF
- Type
- protein
- Length
- 196 residues
- Chains
- 2
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Capsid protein
- UniProt
- P07566
- Pockets
- 3 · best druggability 0.63
Structure
electron microscopy · 1 distinct chain · 11% helix, 42% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Capsid protein | protein | 98 | 11% helix, 42% strand | P07566 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 84 | 0.63 | 0.90 | 20 | empty |
| 2 | 79 | 0.39 | 0.78 | 13 | empty |
| 3 | 65 | 0.33 | 0.76 | 20 | empty |
Interfaces
1 interface between chains.
- A–B · 2690 Ų buried · 38 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 2 disulfide (disulfide).
Compared structures
- 5KHF · Fitted structure of rubella virus capsid protein · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P07566
- Elsewhere: RCSB PDB 5KHF · PDBe 5KHF · UniProt P07566
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