MolNFT v1 · #124506 · RNA
Solution structures of the apo state fluoride riboswitch
5KH8 · Riboswitch (47-mer): “Solution structures of the apo state fluoride riboswitch”. Solution nmr, 2 pockets (best druggability 0.52). MolNFT v1 #124506 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5KH8
- Type
- RNA
- Length
- 47 nucleotides
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Riboswitch (47-mer)
- Pockets
- 2 · best druggability 0.52
Structure
solution nmr · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Riboswitch (47-mer) | rna | 47 | — | — |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 229 | 0.52 | 0.78 | 17 | empty |
| 2 | 50 | 0.27 | 0.76 | 10 | empty |
Compared structures
- 5KH8 · Solution structures of the apo state fluoride riboswitch · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 5KH8 · PDBe 5KH8
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