MolNFT v1 · #124505 · protein
Crystal structure of fragment (3-[6-oxo-3-(3-pyridinyl)-1(6H)- PYRIDAZINYL]PROPANOIC acid) bound in the ubiquitin binding pocket of the HDAC6 zinc-finger domain
5KH7: “Crystal structure of fragment (3-[6-oxo-3-(3-pyridinyl)-1(6H)- PYRIDAZINYL]PROPANOIC acid) bound in the…”. X-ray diffraction, 3 ligands (6T7, ZN, UNX). MolNFT v1 #124505 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5KH7
- Type
- protein
- Length
- 100 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q9UBN7
- Ligands
- 6T7, ZN, UNX
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 100 | — | Q9UBN7 |
Ligands and binding sites
- 6T7 · 3-(6-oxidanylidene-3-pyridin-3-yl-pyridazin-1-yl) propanoic acid · ligand · chains A
- ZN · Zinc ion · metal · 3 copies · chains A
- UNX · Unknown atom or ion · ion · 15 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5KH7 · Crystal structure of fragment (3-[6-Oxo-3-(3-pyridinyl)-1(6H)-pyridazinyl]propanoic acid)… · the same entry in another collection · chain A against A, TM-score 1.00
- Q9UBN7 · AlphaFold monomer V2.0 prediction for histone deacetylase 6 (Q9UBN7) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9UBN7
- Elsewhere: RCSB PDB 5KH7 · PDBe 5KH7 · UniProt Q9UBN7
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