MolNFT v1 · #124501 · protein
Crystal structure of fragment (3-(5-chloro-1,3-benzothiazol-2-yl) propanoic acid) bound in the ubiquitin binding pocket of the HDAC6 zinc-finger domain
5KH3 · Histone deacetylase 6: “Crystal structure of fragment (3-(5-chloro-1,3-benzothiazol-2-yl) propanoic acid) bound in the ubiquitin…”. X-ray diffraction, 3 ligands (6U6, ZN, UNX). MolNFT v1 #124501 on GenesisL1: 3D structure, binding…
- PDB
- 5KH3
- Type
- protein
- Length
- 101 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Histone deacetylase 6
- EC
- 3.5.1.98
- UniProt
- Q9UBN7
- Ligands
- 6U6, ZN, UNX
Structure
x-ray diffraction · 1 distinct chain · 27% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Histone deacetylase 6 (EC 3.5.1.98) | protein | 101 | 27% helix, 18% strand | Q9UBN7 |
Ligands and binding sites
- 6U6 · 3-(5-chloranyl-1,3-benzothiazol-2-yl)propanoic acid · ligand · chains A
- ZN · Zinc ion · metal · 3 copies · chains A
- UNX · Unknown atom or ion · ion · 13 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5KH3 · Crystal structure of fragment (3-(5-Chloro-1,3-benzothiazol-2-yl)propanoic acid) bound in… · the same entry in another collection · chain A against A, TM-score 1.00
- Q9UBN7 · AlphaFold monomer V2.0 prediction for histone deacetylase 6 (Q9UBN7) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9UBN7
- Elsewhere: RCSB PDB 5KH3 · PDBe 5KH3 · UniProt Q9UBN7
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