MolNFT v1 · #124339 · protein
The structure of SAV2435 bound to ethidium bromide
5KCB · SA2223 protein: “The structure of SAV2435 bound to ethidium bromide”. X-ray diffraction, 2 ligands (ET, SO4), 1 pocket (best druggability 0.58). MolNFT v1 #124339 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5KCB
- Type
- protein
- Length
- 165 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- SA2223 protein
- UniProt
- A0A0H3JRN6
- Ligands
- ET, SO4
- Pockets
- 1 · best druggability 0.58
Structure
x-ray diffraction · 1 distinct chain · 28% helix, 36% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | SA2223 protein | protein | 165 | 28% helix, 36% strand | A0A0H3JRN6 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 313 | 0.58 | 0.76 | 40 | ET |
Modifications
Observed in the structure: 1 isopeptide (isopeptide).
Compared structures
- 5KCB · The structure of SAV2435 bound to ethidium bromide · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0H3JRN6
- Elsewhere: RCSB PDB 5KCB · PDBe 5KCB · UniProt A0A0H3JRN6
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