MolNFT v1 · #124337 · protein
Crystal structure of the amino-terminal domain (atd) of iglur delta-1 (GLUD1)
5KC9: “Crystal structure of the amino-terminal domain (atd) of iglur delta-1 (GLUD1)”. X-ray diffraction, 2 ligands (NAG, CL). MolNFT v1 #124337 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5KC9
- Type
- protein
- Length
- 1,158 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q61627
- Ligands
- NAG, CL
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 404 | — | Q61627 |
| B | — | protein | 382 | — | Q61627 |
| C | — | protein | 372 | — | Q61627 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 3 copies · chains A, C, B
- CL · Chloride ion · ion · 14 copies · chains A, B, C
- EDO · 1,2-ethanediol · additive · 29 copies · chains A, B, C
- BU1 · 1,4-butanediol · additive · 2 copies · chains A, C
- PG4 · Tetraethylene glycol · additive · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5KC9 · Crystal structure of the amino-terminal domain (ATD) of iGluR Delta-1 (GluD1) · the same entry in another collection · chain A against A, TM-score 1.00
- Q61627 · AlphaFold monomer V2.0 prediction for glutamate receptor ionotropic, delta-1 (Q61627) · a predicted model of the same protein · chain B against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q61627
- Elsewhere: RCSB PDB 5KC9 · PDBe 5KC9 · UniProt Q61627
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