MolNFT v1 · #124329 · protein
Crystal structure of tmribu, hexagonal crystal form
5KC0 · Riboflavin transporter ribu: “Crystal structure of tmribu, hexagonal crystal form”. X-ray diffraction, 2 ligands (BNG, RBF), 2 pockets (best druggability 0.75). MolNFT v1 #124329 on GenesisL1: 3D structure, binding sites and pockets…
- PDB
- 5KC0
- Type
- protein
- Length
- 166 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Riboflavin transporter ribu
- UniProt
- Q9X1G6
- Ligands
- BNG, RBF
- Pockets
- 2 · best druggability 0.75
Structure
x-ray diffraction · 1 distinct chain · 76% helix, 1% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Riboflavin transporter ribu | protein | 166 | 76% helix, 1% strand | Q9X1G6 |
Ligands and binding sites
- BNG · nonyl beta-D-glucopyranoside · ligand · 2 copies · chains A
- RBF · Riboflavin · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 156 | 0.75 | 0.92 | 27 | RBF |
| 2 | 69 | 0.36 | 0.77 | 15 | empty |
Modifications
Observed in the structure: 3 covalent (covalent ligand).
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9X1G6
- Elsewhere: RCSB PDB 5KC0 · PDBe 5KC0 · UniProt Q9X1G6
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