MolNFT v1 · #124295 · protein

The structure of SAV2435 bound to tetraphenylphosphonium and rhodamine 6G

5KAW · SA2223 protein: “The structure of SAV2435 bound to tetraphenylphosphonium and rhodamine 6G”. X-ray diffraction, 2 ligands (RHQ, P4P), 1 pocket (best druggability 0.58). MolNFT v1 #124295 on GenesisL1: 3D structure, binding sites and…

PDB: 5KAW
Type: protein
Length: 165 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: SA2223 protein
UniProt: A0A0H3JRN6
Ligands: RHQ, P4P
Pockets: 1 · best druggability 0.58

Structure

x-ray diffraction · 1 distinct chain · 27% helix, 35% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	SA2223 protein	protein	165	27% helix, 35% strand	A0A0H3JRN6

Ligands and binding sites

RHQ · Rhodamine 6G · ligand · chains A
P4P · Tetraphenylphosphonium · ligand · chains A
GOL · Glycerol · additive · 6 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	338	0.58	0.76	44	RHQ, P4P, GOL

Compared structures

5KAW · The structure of SAV2435 bound to TETRAPHENYLPHOSPHONIUM and RHODAMINE 6G · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A0H3JRN6
Elsewhere: RCSB PDB 5KAW · PDBe 5KAW · UniProt A0A0H3JRN6

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