MolNFT v1 · #124284 · protein + RNA
Terminal uridylyl transferase 4 from trypanosoma brucei with bound UTP and upu
5KAL: “Terminal uridylyl transferase 4 from trypanosoma brucei with bound UTP and upu”. X-ray diffraction, 2 ligands (UTP, MG). MolNFT v1 #124284 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5KAL
- Type
- protein + RNA
- Length
- 645 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A4UBD5
- Ligands
- UTP, MG
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 325 | — | A4UBD5 |
| B | — | protein | 316 | — | A4UBD5 |
| Y, Z | — | rna | 2 | — | — |
Ligands and binding sites
- UTP · Uridine 5'-triphosphate · ligand · 2 copies · chains A, Y, B, Z
- MG · Magnesium ion · metal · 5 copies · chains A, B, Y, Z
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5KAL · Terminal uridylyl transferase 4 from Trypanosoma brucei with bound UTP and UpU · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A4UBD5
- Elsewhere: RCSB PDB 5KAL · PDBe 5KAL · UniProt A4UBD5
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