MolNFT v1 · #124282 · protein
Crystal structure of a dioxygenase in the crotonase superfamily in P21, A319C mutant
5KAJ: “Crystal structure of a dioxygenase in the crotonase superfamily in P21, A319C mutant”. X-ray diffraction, 1 ligand (YE2). MolNFT v1 #124282 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5KAJ
- Type
- protein
- Length
- 4,991 residues
- Chains
- 12
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q8KLK7
- Ligands
- YE2
Structure
x-ray diffraction · 5 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 414 | — | Q8KLK7 |
| B, D, K | — | protein | 416 | — | Q8KLK7 |
| C, F, L | — | protein | 416 | — | Q8KLK7 |
| E, G, H | — | protein | 417 | — | Q8KLK7 |
| I, J | — | protein | 415 | — | Q8KLK7 |
Ligands and binding sites
- YE2 · [[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(3~{R})-4-[[3-[2-[(~{E})-2-[3,5-bis(oxidanyl)phenyl]-1-oxidanyl-ethenyl]sulfanylethylamino]-3-oxidanylidene-propyl]amino]-2,2-dimethyl-3-oxidanyl-4-oxidanylidene-butyl] hydrogen phosphate · ligand · 12 copies · chains A, B, C, D, E, F, G, H, I, J, K, L
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5KAJ · Crystal structure of a dioxygenase in the Crotonase superfamily in P21, A319C mutant · the same entry in another collection · chain L against L, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8KLK7
- Elsewhere: RCSB PDB 5KAJ · PDBe 5KAJ · UniProt Q8KLK7
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