MolNFT v1 · #124279 · protein
Crystal structure of a dioxygenase in the crotonase superfamily in P21
5KAG: “Crystal structure of a dioxygenase in the crotonase superfamily in P21”. X-ray diffraction, 2 ligands (YE1, OXY). MolNFT v1 #124279 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5KAG
- Type
- protein
- Length
- 5,059 residues
- Chains
- 12
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q8KLK7
- Ligands
- YE1, OXY
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C, E, F, I, L | — | protein | 421 | — | Q8KLK7 |
| B, G, H, K | — | protein | 422 | — | Q8KLK7 |
| D | — | protein | 423 | — | Q8KLK7 |
| J | — | protein | 422 | — | Q8KLK7 |
Ligands and binding sites
- YE1 · [(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)tetrahydrofuran-2-yl]methyl (3R)-4-({3-[(2-{[(3,5-dihydroxyphenyl)acetyl]amino}ethyl)amino]-3-oxopropyl}amino)-3-hydroxy-2,2-dimethyl-4-oxobutyl dihydrogen diphosphate · ligand · 12 copies · chains A, B, C, D, E, F, G, H, I, J, K, L
- OXY · Oxygen molecule · ion · 12 copies · chains A, B, C, D, E, F, G, H, I, J, K, L
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5KAG · Crystal structure of a dioxygenase in the Crotonase superfamily in P21 · the same entry in another collection · chain L against L, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8KLK7
- Elsewhere: RCSB PDB 5KAG · PDBe 5KAG · UniProt Q8KLK7
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