MolNFT v1 · #124257 · protein
Seca-N68, a C-terminal truncation of the seca ATPase from E. COLI
5K9T · Protein translocase subunit seca: “Seca-N68, a C-terminal truncation of the seca ATPase from E. COLI”. X-ray diffraction, 2 ligands (ADP, MG), 2 pockets (best druggability 0.73). MolNFT v1 #124257 on GenesisL1: 3D structure, binding…
- PDB
- 5K9T
- Type
- protein
- Length
- 576 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Protein translocase subunit seca
- UniProt
- B7LFW8
- Ligands
- ADP, MG
- Pockets
- 2 · best druggability 0.73
Structure
x-ray diffraction · 1 distinct chain · 47% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Protein translocase subunit seca | protein | 576 | 47% helix, 15% strand | B7LFW8 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 631 | 0.73 | 0.80 | 78 | ADP, MG |
| 2 | 87 | 0.50 | 0.82 | 15 | empty |
Compared structures
- 5K9T · SecA-N68, a C-terminal truncation of the SecA ATPase from E. coli · the same entry in another collection · chain A against A, TM-score 1.00
- B7LFW8 · AlphaFold monomer V2.0 prediction for protein translocase subunit seca (B7LFW8) · a predicted model of the same protein · chain A against A, TM-score 0.81
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B7LFW8
- Elsewhere: RCSB PDB 5K9T · PDBe 5K9T · UniProt B7LFW8
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