MolNFT v1 · #124206 · protein
X-ray structure of kdnb, 3-deoxy-alpha-D-manno-octulosonate 8-oxidase, from shewanella oneidensis
5K8C: “X-ray structure of kdnb, 3-deoxy-alpha-D-manno-octulosonate 8-oxidase, from shewanella oneidensis”. X-ray diffraction, 4 ligands (NAD, ZN, PO4). MolNFT v1 #124206 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5K8C
- Type
- protein
- Length
- 358 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q8EEB0
- Ligands
- NAD, ZN, PO4, CL
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 358 | — | Q8EEB0 |
Ligands and binding sites
- NAD · Nicotinamide-adenine-dinucleotide · ligand · chains A
- ZN · Zinc ion · metal · chains A
- PO4 · Phosphate ion · ion · 2 copies · chains A
- CL · Chloride ion · ion · 2 copies · chains A
- EDO · 1,2-ethanediol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5K8C · X-ray structure of KdnB, 3-deoxy-alpha-D-manno-octulosonate 8-oxidase, from Shewanella… · the same entry in another collection · chain A against A, TM-score 1.00
- Q8EEB0 · AlphaFold monomer V2.0 prediction for 3-deoxy-alpha-D-manno- octulosonate 8-oxidase… · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8EEB0
- Elsewhere: RCSB PDB 5K8C · PDBe 5K8C · UniProt Q8EEB0
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