MolNFT v1 · #124198 · protein + DNA
Crystal structure of a primate APOBEC3G N-domain, in complex with ssdna
5K83: “Crystal structure of a primate APOBEC3G N-domain, in complex with ssdna”. X-ray diffraction, 1 ligand (ZN). MolNFT v1 #124198 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5K83
- Type
- protein + DNA
- Length
- 1,133 residues
- Chains
- 9
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- M1GSK9
- Ligands
- ZN
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| D, B | — | protein | 185 | — | M1GSK9 |
| C, E, A | — | protein | 191 | — | M1GSK9 |
| I, J, H | — | dna | 2 | — | — |
| F | — | protein | 184 | — | M1GSK9 |
Ligands and binding sites
- ZN · Zinc ion · metal · 6 copies · chains D, C, I, F, E, J, B, A, H
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5K83 · Crystal Structure of a Primate APOBEC3G N-Domain, in Complex with ssDNA · the same entry in another collection · chain D against D, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt M1GSK9
- Elsewhere: RCSB PDB 5K83 · PDBe 5K83 · UniProt M1GSK9
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