MolNFT v1 · #12417 · protein

Crystal structure of the K142Q mutant of E.COLI muty (core fragment)

1KG5 · A/G-specific adenine glycosylase: “Crystal structure of the K142Q mutant of E.COLI muty (core fragment)”. X-ray diffraction, 2 ligands (SF4, SO4), 2 pockets (best druggability 0.68). MolNFT v1 #12417 on GenesisL1: 3D structure…

PDB: 1KG5
Type: protein
Length: 225 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: A/G-specific adenine glycosylase
EC: 3.2.2.-
UniProt: P17802
Ligands: SF4, SO4
Pockets: 2 · best druggability 0.68

Structure

x-ray diffraction · 1 distinct chain · 62% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	A/G-specific adenine glycosylase (EC 3.2.2.-)	protein	225	62% helix, 0% strand	P17802

Ligands and binding sites

SF4 · Iron/sulfur cluster · ligand · chains A
SO4 · Sulfate ion · ion · chains A
GOL · Glycerol · additive · 4 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	52	0.68	0.96	15	SF4
2	155	0.50	0.78	24	GOL

Compared structures

1KG5 · Crystal structure of the K142Q mutant of E.coli MutY (core fragment) · the same entry in another collection · chain A against A, TM-score 1.00
P17802 · AlphaFold monomer V2.0 prediction for adenine DNA glycosylase (P17802) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P17802
Elsewhere: RCSB PDB 1KG5 · PDBe 1KG5 · UniProt P17802

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