MolNFT v1 · #124168 · protein + RNA
DBR1 in complex with 16-mer branched RNA
5K78: “DBR1 in complex with 16-mer branched RNA”. X-ray diffraction, 3 ligands (FE2, ZN, SO4). MolNFT v1 #124168 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5K78
- Type
- protein + RNA
- Length
- 1,759 residues
- Chains
- 9
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- C4M1P9
- Ligands
- FE2, ZN, SO4
Structure
x-ray diffraction · 7 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 347 | — | C4M1P9 |
| B | — | protein | 351 | — | C4M1P9 |
| C, D, E | — | protein | 349 | — | C4M1P9 |
| X | — | rna | 3 | — | — |
| x | — | rna | 5 | — | — |
| Y | — | rna | 2 | — | — |
| y | — | rna | 4 | — | — |
Ligands and binding sites
- FE2 · Fe (II) ion · metal · 5 copies · chains A, B, C, x, D, y, E
- ZN · Zinc ion · metal · 5 copies · chains A, B, C, x, D, y, E
- SO4 · Sulfate ion · ion · 13 copies · chains A, B, C, X, D, E
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt C4M1P9
- Elsewhere: RCSB PDB 5K78 · PDBe 5K78 · UniProt C4M1P9
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