MolNFT v1 · #124167 · protein + RNA
DBR1 in complex with 7-mer branched RNA
5K77: “DBR1 in complex with 7-mer branched RNA”. X-ray diffraction, 4 ligands (ZN, FE2, SO4). MolNFT v1 #124167 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5K77
- Type
- protein + RNA
- Length
- 1,765 residues
- Chains
- 15
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- C4M1P9
- Ligands
- ZN, FE2, SO4, OH
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E | — | protein | 349 | — | C4M1P9 |
| V, W, X, Y, Z | — | rna | 3 | — | — |
| v, w, x, y, z | — | rna | 1 | — | — |
Ligands and binding sites
- ZN · Zinc ion · metal · 5 copies · chains A, v, B, w, C, x, D, y, E, z
- FE2 · Fe (II) ion · metal · 5 copies · chains A, v, B, w, C, x, D, y, E, z
- SO4 · Sulfate ion · ion · 25 copies · chains A, V, B, W, C, X, D, Y, E, Z
- OH · Hydroxide ion · ion · 5 copies · chains A, v, B, w, C, x, D, y, E, z
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5K77 · Dbr1 in complex with 7-mer branched RNA · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt C4M1P9
- Elsewhere: RCSB PDB 5K77 · PDBe 5K77 · UniProt C4M1P9
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