MolNFT v1 · #124119 · protein

Crystal structure of N-terminal amidase C187S

5K5V · NTA1P: “Crystal structure of N-terminal amidase C187S”. X-ray diffraction, 4 pockets (best druggability 0.57). MolNFT v1 #124119 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5K5V
Type: protein
Length: 431 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: NTA1P
UniProt: N1P8Q8
Pockets: 4 · best druggability 0.57

Structure

x-ray diffraction · 1 distinct chain · 26% helix, 25% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	NTA1P	protein	431	26% helix, 25% strand	N1P8Q8

Pockets

4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	169	0.57	0.81	25	empty
2	137	0.49	0.79	20	empty
3	136	0.48	0.78	20	empty
4	59	0.28	0.74	19	empty

Compared structures

5K5V · Crystal structure of N-terminal amidase C187S · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt N1P8Q8
Elsewhere: RCSB PDB 5K5V · PDBe 5K5V · UniProt N1P8Q8

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