MolNFT v1 · #124118 · protein
Crystal structure of N-terminal amidase
5K5U · NTA1P: “Crystal structure of N-terminal amidase”. X-ray diffraction, 2 pockets (best druggability 0.57). MolNFT v1 #124118 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5K5U
- Type
- protein
- Length
- 428 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- NTA1P
- UniProt
- N1P8Q8
- Pockets
- 2 · best druggability 0.57
Structure
x-ray diffraction · 1 distinct chain · 27% helix, 25% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | NTA1P | protein | 428 | 27% helix, 25% strand | N1P8Q8 |
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 266 | 0.57 | 0.77 | 30 | empty |
| 2 | 165 | 0.55 | 0.80 | 29 | empty |
Compared structures
- 5K5U · Crystal structure of N-terminal amidase · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt N1P8Q8
- Elsewhere: RCSB PDB 5K5U · PDBe 5K5U · UniProt N1P8Q8
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