MolNFT v1 · #124110 · protein
Co-crystal structure of dengue virus serotype 2 RNA dependent RNA polymerase with compound 27
5K5M: “Co-crystal structure of dengue virus serotype 2 RNA dependent RNA polymerase with compound 27”. X-ray diffraction, 2 ligands (68T, ZN). MolNFT v1 #124110 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5K5M
- Type
- protein
- Length
- 563 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- B5LNH6
- Ligands
- 68T, ZN
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 563 | — | B5LNH6 |
Ligands and binding sites
- 68T · 5-[5-(3-hydroxyprop-1-yn-1-yl)thiophen-2-yl]-2,4-dimethoxy-N-[(3-methoxyphenyl)sulfonyl]benzamide · ligand · chains A
- ZN · Zinc ion · metal · 2 copies · chains A
- MES · 2-(N-morpholino)-ethanesulfonic acid · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5K5M · Co-Crystal Structure of Dengue Virus Serotype 2 RNA Dependent RNA Polymerase with… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B5LNH6
- Elsewhere: RCSB PDB 5K5M · PDBe 5K5M · UniProt B5LNH6
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.