MolNFT v1 · #124098 · protein
Structure of the PNOB8-like parb N-domain
5K5A · Parb domain protein nuclease: “Structure of the PNOB8-like parb N-domain”. X-ray diffraction, 2 pockets (best druggability 0.58). MolNFT v1 #124098 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5K5A
- Type
- protein
- Length
- 268 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Parb domain protein nuclease
- UniProt
- D0KSP7
- Pockets
- 2 · best druggability 0.58
Structure
x-ray diffraction · 1 distinct chain · 54% helix, 10% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B | Parb domain protein nuclease | protein | 268 | 54% helix, 10% strand | D0KSP7 |
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 225 | 0.58 | 0.80 | 29 | empty |
| 2 | 282 | 0.52 | 0.75 | 36 | empty |
Modifications
Observed in the structure: 3 modified (engineered).
Compared structures
- 5K5A · Structure of the pNOB8-like ParB N-domain · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt D0KSP7
- Elsewhere: RCSB PDB 5K5A · PDBe 5K5A · UniProt D0KSP7
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