MolNFT v1 · #124097 · protein
Crystal structure of lukgh from staphylococcus aureus in complex with a neutralising antibody
5K59: “Crystal structure of lukgh from staphylococcus aureus in complex with a neutralising antibody”. X-ray diffraction, 2 ligands (CL, PO4). MolNFT v1 #124097 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5K59
- Type
- protein
- Length
- 1,982 residues
- Chains
- 8
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q2FFA2, Q2FFA3
- Ligands
- CL, PO4
Structure
x-ray diffraction · 7 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| D | — | protein | 275 | — | Q2FFA2 |
| B | — | protein | 293 | — | Q2FFA3 |
| C | — | protein | 276 | — | Q2FFA2 |
| A | — | protein | 292 | — | Q2FFA3 |
| H | — | protein | 212 | — | — |
| L, F | — | protein | 212 | — | — |
| E | — | protein | 210 | — | — |
Ligands and binding sites
- CL · Chloride ion · ion · chains D, B
- PO4 · Phosphate ion · ion · chains A
- PG4 · Tetraethylene glycol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5K59 · Crystal structure of LukGH from Staphylococcus aureus in complex with a neutralising… · the same entry in another collection · chain F against F, TM-score 1.00
- Q2FFA2 · AlphaFold monomer V2.0 prediction for uncharacterized leukocidin-like protein 2 (Q2FFA2) · a predicted model of the same protein · chain D against A, TM-score 0.98
- Q2FFA3 · AlphaFold monomer V2.0 prediction for uncharacterized leukocidin-like protein 1 (Q2FFA3) · a predicted model of the same protein · chain A against A, TM-score 0.95
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q2FFA2
- Every structure of UniProt Q2FFA3
- Elsewhere: RCSB PDB 5K59 · PDBe 5K59 · UniProt Q2FFA2 · UniProt Q2FFA3
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