MolNFT v1 · #124080 · protein
Three-dimensional structure of L-threonine 3-dehydrogenase from trypanosoma brucei bound to NAD+ refined to 2.3 ångströms
5K4Q: “Three-dimensional structure of L-threonine 3-dehydrogenase from trypanosoma brucei bound to NAD+ refined to…”. X-ray diffraction, 2 ligands (NAD, SO4). MolNFT v1 #124080 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5K4Q
- Type
- protein
- Length
- 1,916 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q7YW97
- Ligands
- NAD, SO4
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, D | — | protein | 320 | — | Q7YW97 |
| B, C, E, F | — | protein | 319 | — | Q7YW97 |
Ligands and binding sites
- NAD · Nicotinamide-adenine-dinucleotide · ligand · 6 copies · chains A, B, C, D, E, F
- SO4 · Sulfate ion · ion · 5 copies · chains B, C, D, F
- GOL · Glycerol · additive · 6 copies · chains A, B, C, D, E, F
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5K4Q · Three-dimensional structure of L-threonine 3-dehydrogenase from Trypanosoma brucei bound… · the same entry in another collection · chain C against C, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q7YW97
- Elsewhere: RCSB PDB 5K4Q · PDBe 5K4Q · UniProt Q7YW97
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