MolNFT v1 · #124030 · protein
Crystal structure of M. tuberculosis uspc (monoclinic crystal form)
5K2Y · Probable periplasmic sugar-binding lipoprotein uspc: “Crystal structure of M. tuberculosis uspc (monoclinic crystal form)”. X-ray diffraction, 4 pockets (best druggability 0.67). MolNFT v1 #124030 on GenesisL1: 3D structure, binding…
- PDB
- 5K2Y
- Type
- protein
- Length
- 800 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Probable periplasmic sugar-binding lipoprotein uspc
- UniProt
- P71894
- Pockets
- 4 · best druggability 0.67
Structure
x-ray diffraction · 1 distinct chain · 46% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Probable periplasmic sugar-binding lipoprotein uspc | protein | 400 | 46% helix, 18% strand | P71894 |
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 708 | 0.67 | 0.75 | 85 | empty |
| 2 | 464 | 0.62 | 0.76 | 78 | empty |
| 3 | 145 | 0.45 | 0.76 | 38 | empty |
| 4 | 128 | 0.39 | 0.74 | 24 | empty |
Interfaces
1 interface between chains.
- A–B · 318 Ų buried · 5 hydrogen bonds · protein-protein
Compared structures
- 5K2Y · Crystal structure of M. tuberculosis UspC (monoclinic crystal form) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P71894
- Elsewhere: RCSB PDB 5K2Y · PDBe 5K2Y · UniProt P71894
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