MolNFT v1 · #123974 · protein + DNA
Crystal structure of CREN7-dsdna (gtgatcgc) complex
5K17 · Chromatin protein CREN7: “Crystal structure of CREN7-dsdna (gtgatcgc) complex”. X-ray diffraction, 2 pockets (best druggability 0.63). MolNFT v1 #123974 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5K17
- Type
- protein + DNA
- Length
- 150 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Chromatin protein CREN7; DNA (5'-D(*GP*TP*GP*AP*TP*CP*GP*C)-3')
- UniProt
- Q97ZE3
- Pockets
- 2 · best druggability 0.63
Structure
x-ray diffraction · 2 distinct chains · 0% helix, 44% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Chromatin protein CREN7 | protein | 59 | 0% helix, 44% strand | Q97ZE3 |
| C, D, E, F | DNA (5'-D(*GP*TP*GP*AP*TP*CP*GP*C)-3') | dna | 8 | — | — |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 298 | 0.63 | 0.80 | 28 | empty |
| 2 | 97 | 0.37 | 0.76 | 15 | empty |
Interfaces
8 interfaces between chains.
- B–E · 532 Ų buried · 8 hydrogen bonds · protein-nucleic
- A–C · 530 Ų buried · 9 hydrogen bonds · protein-nucleic
- B–F · 414 Ų buried · 3 hydrogen bonds · protein-nucleic
- A–D · 413 Ų buried · 3 hydrogen bonds · protein-nucleic
- C–D · 387 Ų buried · 29 hydrogen bonds · nucleic-nucleic
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q97ZE3
- Elsewhere: RCSB PDB 5K17 · PDBe 5K17 · UniProt Q97ZE3
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