MolNFT v1 · #123940 · protein

Recombinant bovine beta-lactoglobulin with uncleaved N-terminal methionine (rblgb)

5K06: “Recombinant bovine beta-lactoglobulin with uncleaved N-terminal methionine (rblgb)”. X-ray diffraction, 1 ligand (MYR), 2 pockets (best druggability 0.70). MolNFT v1 #123940 on GenesisL1: 3D structure, binding sites and pockets in…

PDB: 5K06
Type: protein
Length: 157 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Beta-lactoglobulin
UniProt: P02754
Ligands: MYR
Pockets: 2 · best druggability 0.70

Structure

x-ray diffraction · 1 distinct chain · 15% helix, 43% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Beta-lactoglobulin	protein	157	15% helix, 43% strand	P02754

Ligands and binding sites

MYR · Myristic acid · ligand · chains A
GOL · Glycerol · additive · chains A
SIN · Succinic acid · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	188	0.70	0.86	29	MYR
2	116	0.39	0.75	23	empty

Modifications

Observed in the structure: 2 disulfide (disulfide).

Compared structures

5K06 · Recombinant bovine beta-lactoglobulin with uncleaved N-terminal methionine (rBlgB) · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P02754
Elsewhere: RCSB PDB 5K06 · PDBe 5K06 · UniProt P02754

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