MolNFT v1 · #123930 · protein
The structure of D77G hcinap-ADP
5JZV · Adenylate kinase isoenzyme 6: “The structure of D77G hcinap-ADP”. X-ray diffraction, 1 ligand (ADP), 1 pocket (best druggability 0.55). MolNFT v1 #123930 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5JZV
- Type
- protein
- Length
- 175 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Adenylate kinase isoenzyme 6
- EC
- 2.7.4.3
- UniProt
- Q9Y3D8
- Ligands
- ADP
- Pockets
- 1 · best druggability 0.55
Structure
x-ray diffraction · 1 distinct chain · 53% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Adenylate kinase isoenzyme 6 (EC 2.7.4.3) | protein | 175 | 53% helix, 18% strand | Q9Y3D8 |
Ligands and binding sites
- ADP · Adenosine-5'-diphosphate · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 364 | 0.55 | 0.74 | 47 | ADP |
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9Y3D8
- Elsewhere: RCSB PDB 5JZV · PDBe 5JZV · UniProt Q9Y3D8
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