MolNFT v1 · #123926 · protein
Solid-state mas NMR structure of acinetobacter phage 205 (AP205) coat protein in assembled capsid particles
5JZR: “Solid-state mas NMR structure of acinetobacter phage 205 (AP205) coat protein in assembled capsid particles”. Solid-state nmr, 4 pockets (best druggability 0.83). MolNFT v1 #123926 on GenesisL1: 3D structure, binding sites and…
- PDB
- 5JZR
- Type
- protein
- Length
- 262 residues
- Chains
- 2
- Method
- solid-state nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Coat protein
- UniProt
- Q9AZ42
- Pockets
- 4 · best druggability 0.83
Structure
solid-state nmr · 1 distinct chain · 19% helix, 32% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Coat protein | protein | 131 | 19% helix, 32% strand | Q9AZ42 |
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 516 | 0.83 | 0.89 | 89 | empty |
| 2 | 80 | 0.70 | 0.94 | 20 | empty |
| 3 | 126 | 0.48 | 0.79 | 26 | empty |
| 4 | 106 | 0.42 | 0.77 | 20 | empty |
Interfaces
1 interface between chains.
- A–B · 3067 Ų buried · 28 hydrogen bonds · protein-protein
Compared structures
- 5JZR · Solid-state MAS NMR structure of Acinetobacter phage 205 (AP205) coat protein in… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9AZ42
- Elsewhere: RCSB PDB 5JZR · PDBe 5JZR · UniProt Q9AZ42
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