MolNFT v1 · #123901 · protein

PRY1 cap domain

5JYS · Protein PRY1: “PRY1 cap domain”. X-ray diffraction, 1 ligand (MG), 1 pocket (best druggability 0.25). MolNFT v1 #123901 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5JYS
Type: protein
Length: 141 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Protein PRY1
UniProt: P47032
Ligands: MG
Pockets: 1 · best druggability 0.25

Structure

x-ray diffraction · 1 distinct chain · 35% helix, 18% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Protein PRY1	protein	141	35% helix, 18% strand	P47032

Ligands and binding sites

MG · Magnesium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	51	0.25	0.73	17	empty

Modifications

Observed in the structure: 2 disulfide (disulfide).

Compared structures

5JYS · Pry1 CAP domain · the same entry in another collection · chain A against A, TM-score 1.00
P47032 · AlphaFold monomer V2.0 prediction for protein PRY1 (P47032) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P47032
Elsewhere: RCSB PDB 5JYS · PDBe 5JYS · UniProt P47032

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