MolNFT v1 · #123879 · protein
Crystal structure of thioredoxin 1 from cryptococcus neoformans at 1.8 ångströms resolution
5JY5: “Crystal structure of thioredoxin 1 from cryptococcus neoformans at 1.8 ångströms resolution”. X-ray diffraction, 1 ligand (SO4). MolNFT v1 #123879 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5JY5
- Type
- protein
- Length
- 210 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Thioredoxin
- UniProt
- J9VKF2
- Ligands
- SO4
Structure
x-ray diffraction · 1 distinct chain · 42% helix, 27% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Thioredoxin | protein | 105 | 42% helix, 27% strand | J9VKF2 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 3 copies · chains A, B
- GOL · Glycerol · additive · 3 copies · chains A, B
- TRS · 2-amino-2-hydroxymethyl-propane-1,3-diol · additive · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 637 Ų buried · 13 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 2 disulfide (disulfide).
Compared structures
- 5JY5 · Crystal structure of Thioredoxin 1 from Cryptococcus neoformans at 1.8 Angstroms… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt J9VKF2
- Elsewhere: RCSB PDB 5JY5 · PDBe 5JY5 · UniProt J9VKF2
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