MolNFT v1 · #123845 · protein
Crystal structure of E36-G37DEL mutant of the bacillus caldolyticus cold shock protein.
5JX4 · Cold shock protein cspb: “Crystal structure of E36-G37DEL mutant of the bacillus caldolyticus cold shock protein.”. X-ray diffraction, 1 ligand (SO4), 1 pocket (best druggability 0.49). MolNFT v1 #123845 on GenesisL1: 3D structure…
- PDB
- 5JX4
- Type
- protein
- Length
- 131 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cold shock protein cspb
- UniProt
- P41016
- Ligands
- SO4
- Pockets
- 1 · best druggability 0.49
Structure
x-ray diffraction · 2 distinct chains · 5% helix, 56% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Cold shock protein cspb | protein | 65 | 5% helix, 57% strand | P41016 |
| B | Cold shock protein cspb | protein | 66 | 5% helix, 56% strand | P41016 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 5 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 151 | 0.49 | 0.77 | 21 | empty |
Interfaces
1 interface between chains.
- A–B · 467 Ų buried · 6 hydrogen bonds · protein-protein
Compared structures
- 5JX4 · Crystal structure of E36-G37del mutant of the Bacillus caldolyticus cold shock protein. · the same entry in another collection · chain A against A, TM-score 1.00
- P41016 · AlphaFold monomer V2.0 prediction for cold shock protein cspb (P41016) · a predicted model of the same protein · chain A against A, TM-score 0.91
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P41016
- Elsewhere: RCSB PDB 5JX4 · PDBe 5JX4 · UniProt P41016
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