MolNFT v1 · #123756 · DNA

Crystal structure of a DNA sequence D(CGTGAATTCACG) at 130K

5JU4 · DNA (5'-D(*CP*GP*TP*GP*AP*AP*TP*TP*CP*AP*CP*G)-3'): “Crystal structure of a DNA sequence D(CGTGAATTCACG) at 130K”. X-ray diffraction, 2 ligands (MG, CL). MolNFT v1 #123756 on GenesisL1: 3D structure, binding sites and pockets in…

PDB: 5JU4
Type: DNA
Length: 24 nucleotides
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: DNA (5'-D(*CP*GP*TP*GP*AP*AP*TP*TP*CP*AP*CP*G)-3')
Ligands: MG, CL

Structure

x-ray diffraction · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	DNA (5'-D(CPGPTPGPAPAPTPTPCPAPCPG)-3')	dna	12	—	—

Ligands and binding sites

MG · Magnesium ion · metal · chains A
CL · Chloride ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

1 interface between chains.

A–B · 566 Å² buried · 51 hydrogen bonds · nucleic-nucleic

Compared structures

5JU4 · Crystal structure of a DNA sequence d(CGTGAATTCACG) at 130K · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 5JU4 · PDBe 5JU4

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