MolNFT v1 · #123678 · protein
Crystal structure of monoclonal antibody MR78 Fab
5JRP · Marberg virus monoclonal antibody MR78 Fab light chain: “Crystal structure of monoclonal antibody MR78 Fab”. X-ray diffraction, 1 ligand (NA), 5 pockets (best druggability 0.64). MolNFT v1 #123678 on GenesisL1: 3D structure, binding…
- PDB
- 5JRP
- Type
- protein
- Length
- 430 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Marberg virus monoclonal antibody MR78 Fab light chain; Marberg virus monoclonal antibody…
- Ligands
- NA
- Pockets
- 5 · best druggability 0.64
Structure
x-ray diffraction · 2 distinct chains · 6% helix, 54% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| L | Marberg virus monoclonal antibody MR78 Fab light chain | protein | 210 | 6% helix, 52% strand | — |
| H | Marberg virus monoclonal antibody MR78 Fab heavy chain | protein | 220 | 5% helix, 55% strand | — |
Ligands and binding sites
- NA · Sodium ion · metal · chains L
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 664 | 0.64 | 0.74 | 65 | empty |
| 2 | 60 | 0.53 | 0.87 | 20 | empty |
| 3 | 54 | 0.36 | 0.79 | 14 | empty |
| 4 | 66 | 0.29 | 0.73 | 18 | empty |
| 5 | 63 | 0.28 | 0.73 | 13 | empty |
Interfaces
1 interface between chains.
- L–H · 1829 Ų buried · 17 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 2 disulfide (disulfide).
Compared structures
- 5JRP · crystal structure of monoclonal antibody MR78 Fab · the same entry in another collection · chain L against L, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 5JRP · PDBe 5JRP
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