MolNFT v1 · #123676 · protein

Crystal structure of a xylanase in complex with a monosaccharide at 2.84 angstroem resolution

5JRN · Endo-1,4-beta-xylanase: “Crystal structure of a xylanase in complex with a monosaccharide at 2.84 angstroem resolution”. X-ray diffraction, 1 ligand (6MJ), 1 pocket (best druggability 0.63). MolNFT v1 #123676 on GenesisL1: 3D…

PDB: 5JRN
Type: protein
Length: 189 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Endo-1,4-beta-xylanase
EC: 3.2.1.8
UniProt: X0M5X0
Ligands: 6MJ
Pockets: 1 · best druggability 0.63

Structure

x-ray diffraction · 1 distinct chain · 5% helix, 64% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Endo-1,4-beta-xylanase (EC 3.2.1.8)	protein	189	5% helix, 64% strand	X0M5X0

Ligands and binding sites

6MJ · methyl beta-D-xylopyranoside · ligand · chains A
GOL · Glycerol · additive · 7 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	326	0.63	0.79	44	GOL, 6MJ

Compared structures

5JRN · Crystal Structure of a Xylanase in Complex with a Monosaccharide at 2.84 Angstroem… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt X0M5X0
Elsewhere: RCSB PDB 5JRN · PDBe 5JRN · UniProt X0M5X0

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